Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00977.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3263
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.29


Found at i:1147 original size:93 final size:93

Alignment explanation


    Indices: 988--1200  Score: 327
    Period size: 93  Copynumber: 2.3  Consensus size: 93

        978 AAGAGAAAAC

                           *                              **    **    * *    
        988 CAAGAAGAAGATCAGCAAAGCTAAAGAATCTGTTGAACCTCCAAGGGGTTCATTAATTTCGGAAG
          1 CAAGAAGAAGATCAGTAAAGCTAAAGAATCTGTTGAACCTCCAAGGAATTCACAAATTCCAGAAG

                                        
       1053 TTGTCCAAGAGAAAACAGAGAAGAAGAA
         66 TTGTCCAAGAGAAAACAGAGAAGAAGAA

                  *               *                                          
       1081 CAAGAAAAAGATCAGTAAAGCTGAAGAATCTGTTGAACCTCCAAGGAATTCACAAATTCCAGAAG
          1 CAAGAAGAAGATCAGTAAAGCTAAAGAATCTGTTGAACCTCCAAGGAATTCACAAATTCCAGAAG

                 *          *           
       1146 TTGTCGAAGAGAAAACCGAGAAGAAGAA
         66 TTGTCCAAGAGAAAACAGAGAAGAAGAA

                                       
       1174 CAAGAAGAAGATCAGTAAAGCTAAAGA
          1 CAAGAAGAAGATCAGTAAAGCTAAAGA

       1201 TAACAAGGCT


Statistics
Matches: 107,  Mismatches: 13, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  93  107  1.00

ACGTcount: A:0.46, C:0.15, G:0.23, T:0.16


Consensus pattern (93 bp):   
CAAGAAGAAGATCAGTAAAGCTAAAGAATCTGTTGAACCTCCAAGGAATTCACAAATTCCAGAAG
TTGTCCAAGAGAAAACAGAGAAGAAGAA
Done.