Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g00981.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 774

Length: 1291
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33


Found at i:1234 original size:14 final size:14

Alignment explanation


    Indices: 1215--1247  Score: 57
    Period size: 14  Copynumber: 2.4  Consensus size: 14

       1205 TATTCTTAAT

                          
       1215 AGAAAAAAAAAAAA
          1 AGAAAAAAAAAAAA

                   *      
       1229 AGAAAAAGAAAAAA
          1 AGAAAAAAAAAAAA

                 
       1243 AGAAA
          1 AGAAA

       1248 GTCTGAGGCA


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  14   18  1.00

ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00


Consensus pattern (14 bp):   
AGAAAAAAAAAAAA
Done.