Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01003.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2608
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29


Found at i:2141 original size:48 final size:48

Alignment explanation


    Indices: 2070--2166  Score: 194
    Period size: 48  Copynumber: 2.0  Consensus size: 48

       2060 GAGATTGTGA

                                                            
       2070 TTAAATATGGGCTAGTTTCGTATACGAGGAAAACAAGTTGGGCCAGGT
          1 TTAAATATGGGCTAGTTTCGTATACGAGGAAAACAAGTTGGGCCAGGT

                                                            
       2118 TTAAATATGGGCTAGTTTCGTATACGAGGAAAACAAGTTGGGCCAGGT
          1 TTAAATATGGGCTAGTTTCGTATACGAGGAAAACAAGTTGGGCCAGGT

             
       2166 T
          1 T

       2167 GGTCAAAGTT


Statistics
Matches: 49,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  48   49  1.00

ACGTcount: A:0.31, C:0.12, G:0.29, T:0.28


Consensus pattern (48 bp):   
TTAAATATGGGCTAGTTTCGTATACGAGGAAAACAAGTTGGGCCAGGT
Done.