Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga08g01003.F3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4428
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Found at i:1776 original size:48 final size:48
Alignment explanation
Indices: 1705--1798 Score: 170
Period size: 48 Copynumber: 2.0 Consensus size: 48
1695 AAAAAAAAAA
*
1705 TTGTCTGCAACTCTGCATTGGTCAACTTGGAATTACAGTTAGGATTAT
1 TTGTCTGCAACTCTGCATTGGTCAACTTGGAATTACAATTAGGATTAT
*
1753 TTGTCTGCAACTCTGCATTGGTCAACTTGGGATTACAATTAGGATT
1 TTGTCTGCAACTCTGCATTGGTCAACTTGGAATTACAATTAGGATT
1799 GGTAAATTTG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.24, C:0.17, G:0.21, T:0.37
Consensus pattern (48 bp):
TTGTCTGCAACTCTGCATTGGTCAACTTGGAATTACAATTAGGATTAT
Found at i:3961 original size:48 final size:48
Alignment explanation
Indices: 3890--3986 Score: 194
Period size: 48 Copynumber: 2.0 Consensus size: 48
3880 GAGATTGTGA
3890 TTAAATATGGGCTAGTTTCGTATACGAGGAAAACAAGTTGGGCCAGGT
1 TTAAATATGGGCTAGTTTCGTATACGAGGAAAACAAGTTGGGCCAGGT
3938 TTAAATATGGGCTAGTTTCGTATACGAGGAAAACAAGTTGGGCCAGGT
1 TTAAATATGGGCTAGTTTCGTATACGAGGAAAACAAGTTGGGCCAGGT
3986 T
1 T
3987 GGTCAAAGTT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.31, C:0.12, G:0.29, T:0.28
Consensus pattern (48 bp):
TTAAATATGGGCTAGTTTCGTATACGAGGAAAACAAGTTGGGCCAGGT
Done.