Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01005.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2030
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.31


Found at i:1955 original size:13 final size:13

Alignment explanation


    Indices: 1937--1961  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       1927 GTGCATATGA

                         
       1937 TTTTCTTCTTTTT
          1 TTTTCTTCTTTTT

                        
       1950 TTTTCTTCTTTT
          1 TTTTCTTCTTTT

       1962 AGCGGCTATA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84


Consensus pattern (13 bp):   
TTTTCTTCTTTTT
Done.