Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01011.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3441
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.33


Found at i:66 original size:6 final size:6

Alignment explanation


    Indices: 57--100  Score: 88
    Period size: 6  Copynumber: 7.3  Consensus size: 6

         47 AACAGCATCG

                                                               
         57 TCAACC TCAACC TCAACC TCAACC TCAACC TCAACC TCAACC TC
          1 TCAACC TCAACC TCAACC TCAACC TCAACC TCAACC TCAACC TC

        101 GCTTACTCAC


Statistics
Matches: 38,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   38  1.00

ACGTcount: A:0.32, C:0.50, G:0.00, T:0.18


Consensus pattern (6 bp):   
TCAACC

Done.