Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01018.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2843
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30


Found at i:1195 original size:15 final size:15

Alignment explanation


    Indices: 1175--1205  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       1165 GCAGAGGACT

                           
       1175 GCCATTGGTTGCAAG
          1 GCCATTGGTTGCAAG

                           
       1190 GCCATTGGTTGCAAG
          1 GCCATTGGTTGCAAG

             
       1205 G
          1 G

       1206 GTTATTGGAG


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.19, C:0.19, G:0.35, T:0.26


Consensus pattern (15 bp):   
GCCATTGGTTGCAAG

Found at i:2821 original size:43 final size:43

Alignment explanation


    Indices: 2753--2837  Score: 143
    Period size: 43  Copynumber: 2.0  Consensus size: 43

       2743 AATGTTTTTA

                                                       
       2753 TTTTATCTTTTAGTAGATTACTAGAATAAGGGAACTATTTTCT
          1 TTTTATCTTTTAGTAGATTACTAGAATAAGGGAACTATTTTCT

                  *         *   *                     
       2796 TTTTATGTTTTAGTAGTTTATTAGAATAAGGGAACTATTTTC
          1 TTTTATCTTTTAGTAGATTACTAGAATAAGGGAACTATTTTC

       2838 CCAATT


Statistics
Matches: 39,  Mismatches: 3, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  43   39  1.00

ACGTcount: A:0.29, C:0.07, G:0.15, T:0.48


Consensus pattern (43 bp):   
TTTTATCTTTTAGTAGATTACTAGAATAAGGGAACTATTTTCT
Done.