Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01019.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2101
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27


Found at i:1955 original size:55 final size:55

Alignment explanation


    Indices: 1888--1999  Score: 206
    Period size: 55  Copynumber: 2.0  Consensus size: 55

       1878 AAAAACTGAT

                                *                                  
       1888 CATGCATTACTTTATAATGGTATATTTTGATCTTCTAGTGGATAACATTATACAA
          1 CATGCATTACTTTATAATGGCATATTTTGATCTTCTAGTGGATAACATTATACAA

                                                     *             
       1943 CATGCATTACTTTATAATGGCATATTTTGATCTTCTAGTGGGTAACATTATACAA
          1 CATGCATTACTTTATAATGGCATATTTTGATCTTCTAGTGGATAACATTATACAA

              
       1998 CA
          1 CA

       2000 GATAGGTCTT


Statistics
Matches: 55,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  55   55  1.00

ACGTcount: A:0.32, C:0.14, G:0.13, T:0.40


Consensus pattern (55 bp):   
CATGCATTACTTTATAATGGCATATTTTGATCTTCTAGTGGATAACATTATACAA
Done.