Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01020.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2428
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.34


Found at i:2348 original size:2 final size:2

Alignment explanation


    Indices: 2343--2373  Score: 53
    Period size: 2  Copynumber: 15.5  Consensus size: 2

       2333 TTTTTTTTTT

                                           *              
       2343 TG TG TG TG TG TG TG TG TG TG TC TG TG TG TG T
          1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T

       2374 ATAGGCATGT


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   2   27  1.00

ACGTcount: A:0.00, C:0.03, G:0.45, T:0.52


Consensus pattern (2 bp):   
TG

Done.