Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01871.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3090
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.32


Found at i:2810 original size:20 final size:20

Alignment explanation


    Indices: 2785--2825  Score: 82
    Period size: 20  Copynumber: 2.0  Consensus size: 20

       2775 TGGGAGAGTC

                                
       2785 AGTCATAAGTCTTTGAAAGG
          1 AGTCATAAGTCTTTGAAAGG

                                
       2805 AGTCATAAGTCTTTGAAAGG
          1 AGTCATAAGTCTTTGAAAGG

             
       2825 A
          1 A

       2826 CTAGTGTGGT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   21  1.00

ACGTcount: A:0.37, C:0.10, G:0.24, T:0.29


Consensus pattern (20 bp):   
AGTCATAAGTCTTTGAAAGG
Done.