Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01029.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 742

Length: 1238
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.26


Found at i:262 original size:60 final size:60

Alignment explanation


    Indices: 165--290  Score: 189
    Period size: 60  Copynumber: 2.1  Consensus size: 60

        155 GCCTCGTCCT

                          *        *                       *            
        165 GACCCAGCTCGAGAGCCAGCATAGGAACCGGCAGATGAACCAGCTTCCGAACCTGCACCA
          1 GACCCAGCTCGAGACCCAGCATAAGAACCGGCAGATGAACCAGCTTCAGAACCTGCACCA

                 *              *        *  *                           
        225 GACCCGGCTCGAGACCCAGCGTAAGAACCTGCGGATGAACCAGCTTCAGAACCTGCACCA
          1 GACCCAGCTCGAGACCCAGCATAAGAACCGGCAGATGAACCAGCTTCAGAACCTGCACCA

                  
        285 GACCCA
          1 GACCCA

        291 CCAGATGAAC


Statistics
Matches: 58,  Mismatches: 8, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  60   58  1.00

ACGTcount: A:0.29, C:0.36, G:0.25, T:0.10


Consensus pattern (60 bp):   
GACCCAGCTCGAGACCCAGCATAAGAACCGGCAGATGAACCAGCTTCAGAACCTGCACCA
Done.