Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01030.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 512

Length: 854
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.33


Found at i:465 original size:60 final size:60

Alignment explanation


    Indices: 398--522  Score: 187
    Period size: 60  Copynumber: 2.1  Consensus size: 60

        388 TTCATCTGGT

                             *                       *        *         
        398 GGGTCTGGTGCAGGTTCTGAAGCTGGTTCATCCGCAGGTTCTTACGCTGGGTCTCGAGCC
          1 GGGTCTGGTGCAGGTTCGGAAGCTGGTTCATCCGCAGGTTCCTACGCTGGCTCTCGAGCC

                                            *  *        *              *
        458 GGGTCTGGTGCAGGTTCGGAAGCTGGTTCATCTGCCGGTTCCTATGCTGGCTCTCGAGCT
          1 GGGTCTGGTGCAGGTTCGGAAGCTGGTTCATCCGCAGGTTCCTACGCTGGCTCTCGAGCC

                 
        518 GGGTC
          1 GGGTC

        523 AGGACGAGGC


Statistics
Matches: 58,  Mismatches: 7, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  60   58  1.00

ACGTcount: A:0.10, C:0.25, G:0.36, T:0.29


Consensus pattern (60 bp):   
GGGTCTGGTGCAGGTTCGGAAGCTGGTTCATCCGCAGGTTCCTACGCTGGCTCTCGAGCC
Done.