Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01033.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2325
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34


Found at i:1863 original size:21 final size:22

Alignment explanation


    Indices: 1834--1874  Score: 66
    Period size: 21  Copynumber: 1.9  Consensus size: 22

       1824 AAGTGGACTA

                      *           
       1834 CTTGTGATGTTGCAACACAGAG
          1 CTTGTGATGTCGCAACACAGAG

                                
       1856 CTTG-GATGTCGCAACACAG
          1 CTTGTGATGTCGCAACACAG

       1875 CAAGCAAAAT


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  21   14  0.78
  22    4  0.22

ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24


Consensus pattern (22 bp):   
CTTGTGATGTCGCAACACAGAG
Done.