Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01035.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2126
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32


Found at i:87 original size:10 final size:10

Alignment explanation


    Indices: 72--100  Score: 51
    Period size: 9  Copynumber: 3.0  Consensus size: 10

         62 AACACCCCCC

                      
         72 TTTCTTTTCT
          1 TTTCTTTTCT

                      
         82 TTTCTTTTC-
          1 TTTCTTTTCT

                      
         91 TTTCTTTTCT
          1 TTTCTTTTCT

        101 CCCTGTTTCT


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
   9    9  0.50
  10    9  0.50

ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79


Consensus pattern (10 bp):   
TTTCTTTTCT

Found at i:94 original size:4 final size:5

Alignment explanation


    Indices: 72--100  Score: 51
    Period size: 5  Copynumber: 6.0  Consensus size: 5

         62 AACACCCCCC

                                               
         72 TTTCT TTTCT TTTCT TTTC- TTTCT TTTCT
          1 TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT

        101 CCCTGTTTCT


Statistics
Matches: 23,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
   4    4  0.17
   5   19  0.83

ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79


Consensus pattern (5 bp):   
TTTCT

Done.