Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01036.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1851
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.30


Found at i:1656 original size:36 final size:36

Alignment explanation


    Indices: 1609--1679  Score: 124
    Period size: 36  Copynumber: 2.0  Consensus size: 36

       1599 TCCCATAAAA

                                    **          
       1609 GGAAATAAAGGAAAGATAAAAAAAGTTCATTTTATG
          1 GGAAATAAAGGAAAGATAAAAAAAAATCATTTTATG

                                               
       1645 GGAAATAAAGGAAAGATAAAAAAAAATCATTTTAT
          1 GGAAATAAAGGAAAGATAAAAAAAAATCATTTTAT

       1680 TTGATAAAAA


Statistics
Matches: 33,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  36   33  1.00

ACGTcount: A:0.56, C:0.03, G:0.17, T:0.24


Consensus pattern (36 bp):   
GGAAATAAAGGAAAGATAAAAAAAAATCATTTTATG

Found at i:1751 original size:68 final size:69

Alignment explanation


    Indices: 1649--1851  Score: 399
    Period size: 68  Copynumber: 3.0  Consensus size: 69

       1639 TTTATGGGAA

                                                                             
       1649 ATAAAGGAAAGATAAAAAAAAATCATTTTATTTGATAAAAAATAGAAAAGTTCAAAATTGAAGTA
          1 ATAAAGGAAAGATAAAAAAAAATCATTTTATTTGATAAAAAATAGAAAAGTTCAAAATTGAAGTA

                
       1714 AATT
         66 AATT

                                                                             
       1718 ATAAAGGAAAGAT-AAAAAAAATCATTTTATTTGATAAAAAATAGAAAAGTTCAAAATTGAAGTA
          1 ATAAAGGAAAGATAAAAAAAAATCATTTTATTTGATAAAAAATAGAAAAGTTCAAAATTGAAGTA

                
       1782 AATT
         66 AATT

                                                                             
       1786 ATAAAGGAAAGATAAAAAAAAATCATTTTATTTGATAAAAAATAGAAAAGTTCAAAATTGAAGTA
          1 ATAAAGGAAAGATAAAAAAAAATCATTTTATTTGATAAAAAATAGAAAAGTTCAAAATTGAAGTA

             
       1851 A
         66 A


Statistics
Matches: 133,  Mismatches: 0, Indels: 2
        0.99            0.00        0.01

Matches are distributed among these distances:
  68   68  0.51
  69   65  0.49

ACGTcount: A:0.58, C:0.03, G:0.12, T:0.27


Consensus pattern (69 bp):   
ATAAAGGAAAGATAAAAAAAAATCATTTTATTTGATAAAAAATAGAAAAGTTCAAAATTGAAGTA
AATT
Done.