Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01038.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3102
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37


Found at i:1981 original size:29 final size:30

Alignment explanation


    Indices: 1948--2014  Score: 82
    Period size: 29  Copynumber: 2.3  Consensus size: 30

       1938 TCTATGACTT

                                          
       1948 GATCAAATTAATATTTCTACTATTAAAT-G
          1 GATCAAATTAATATTTCTACTATTAAATAG

                  *     *   *    *        
       1977 GATCAATTTAATCTTTGTACTGTTAAATAG
          1 GATCAAATTAATATTTCTACTATTAAATAG

            *       
       2007 AATCAAAT
          1 GATCAAAT

       2015 AAGGTCAAAT


Statistics
Matches: 31,  Mismatches: 6, Indels: 1
        0.82            0.16        0.03

Matches are distributed among these distances:
  29   24  0.77
  30    7  0.23

ACGTcount: A:0.40, C:0.10, G:0.09, T:0.40


Consensus pattern (30 bp):   
GATCAAATTAATATTTCTACTATTAAATAG
Done.