Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01041.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3375
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35


Found at i:98 original size:15 final size:16

Alignment explanation


    Indices: 78--114  Score: 60
    Period size: 15  Copynumber: 2.4  Consensus size: 16

         68 TTACCTCCGC

                            
         78 CTTCTTCTCCTTC-TT
          1 CTTCTTCTCCTTCGTT

                            
         93 CTTCTTCTCCTTCGTT
          1 CTTCTTCTCCTTCGTT

                   
        109 -TTCTTC
          1 CTTCTTC

        115 ACATTGTTTT


Statistics
Matches: 21,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
  15   19  0.90
  16    2  0.10

ACGTcount: A:0.00, C:0.38, G:0.03, T:0.59


Consensus pattern (16 bp):   
CTTCTTCTCCTTCGTT

Found at i:2187 original size:14 final size:14

Alignment explanation


    Indices: 2168--2195  Score: 56
    Period size: 14  Copynumber: 2.0  Consensus size: 14

       2158 AATGGATTGA

                          
       2168 CTGTCTTTAGGGTC
          1 CTGTCTTTAGGGTC

                          
       2182 CTGTCTTTAGGGTC
          1 CTGTCTTTAGGGTC

       2196 ATATTTTCTT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   14  1.00

ACGTcount: A:0.07, C:0.21, G:0.29, T:0.43


Consensus pattern (14 bp):   
CTGTCTTTAGGGTC
Done.