Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01046.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3224
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32


Found at i:1595 original size:16 final size:16

Alignment explanation


    Indices: 1574--1607  Score: 68
    Period size: 16  Copynumber: 2.1  Consensus size: 16

       1564 ATCAAAGGCA

                            
       1574 TGACAGAAATCTCAAT
          1 TGACAGAAATCTCAAT

                            
       1590 TGACAGAAATCTCAAT
          1 TGACAGAAATCTCAAT

              
       1606 TG
          1 TG

       1608 GTAAAAATAT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   18  1.00

ACGTcount: A:0.41, C:0.18, G:0.15, T:0.26


Consensus pattern (16 bp):   
TGACAGAAATCTCAAT

Found at i:2744 original size:23 final size:20

Alignment explanation


    Indices: 2718--2769  Score: 50
    Period size: 23  Copynumber: 2.4  Consensus size: 20

       2708 TTTGAGAAAA

                                   
       2718 AGAAAAATAAGAAGAAGAGAAGG
          1 AGAAAAATAAGAAG--GAGAA-G

                 * *            
       2741 AGAAAGAGAAGAAGGAGAAG
          1 AGAAAAATAAGAAGGAGAAG

                     
       2761 AGGAAAAAT
          1 A-GAAAAAT

       2770 GAATATGTCT


Statistics
Matches: 24,  Mismatches: 4, Indels: 4
        0.75            0.12        0.12

Matches are distributed among these distances:
  20    2  0.08
  21   10  0.42
  23   12  0.50

ACGTcount: A:0.63, C:0.00, G:0.33, T:0.04


Consensus pattern (20 bp):   
AGAAAAATAAGAAGGAGAAG
Done.