Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01047.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 808

Length: 1348
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.35


Found at i:189 original size:16 final size:16

Alignment explanation


    Indices: 165--212  Score: 50
    Period size: 16  Copynumber: 3.2  Consensus size: 16

        155 ATTAACAAAG

                            
        165 CCCTAAACACCATTGC
          1 CCCTAAACACCATTGC

                *        *  
        181 CCCTCAACA--A-AG-
          1 CCCTAAACACCATTGC

                            
        193 CCCTAAACACCATTGC
          1 CCCTAAACACCATTGC

                
        209 CCCT
          1 CCCT

        213 CACTGCCTGT


Statistics
Matches: 24,  Mismatches: 4, Indels: 8
        0.67            0.11        0.22

Matches are distributed among these distances:
  12    8  0.33
  13    1  0.04
  14    2  0.08
  15    1  0.04
  16   12  0.50

ACGTcount: A:0.31, C:0.46, G:0.06, T:0.17


Consensus pattern (16 bp):   
CCCTAAACACCATTGC

Found at i:198 original size:28 final size:28

Alignment explanation


    Indices: 158--214  Score: 114
    Period size: 28  Copynumber: 2.0  Consensus size: 28

        148 CTTCTCCATT

                                        
        158 AACAAAGCCCTAAACACCATTGCCCCTC
          1 AACAAAGCCCTAAACACCATTGCCCCTC

                                        
        186 AACAAAGCCCTAAACACCATTGCCCCTC
          1 AACAAAGCCCTAAACACCATTGCCCCTC

             
        214 A
          1 A

        215 CTGCCTGTAG


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  28   29  1.00

ACGTcount: A:0.37, C:0.42, G:0.07, T:0.14


Consensus pattern (28 bp):   
AACAAAGCCCTAAACACCATTGCCCCTC
Done.