Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01056.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4063
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.34


Found at i:1284 original size:36 final size:36

Alignment explanation


    Indices: 1229--1338  Score: 157
    Period size: 36  Copynumber: 3.1  Consensus size: 36

       1219 TGTCACATTT

                       *                   *    
       1229 ATCGCAATTGCAGGCTTAAGGGAGACTATTGTGGTC
          1 ATCGCAATTGCGGGCTTAAGGGAGACTATTGCGGTC

                          *                     
       1265 ATCGCAATTGCGGGTTTAAGGGAGACTATTGCGGTC
          1 ATCGCAATTGCGGGCTTAAGGGAGACTATTGCGGTC

              *       *  *                  *   
       1301 ATAGCAATTGTGGCCTTAAGGGAGACTATTGCAGTC
          1 ATCGCAATTGCGGGCTTAAGGGAGACTATTGCGGTC

              
       1337 AT
          1 AT

       1339 GGAATTTTTT


Statistics
Matches: 66,  Mismatches: 8, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  36   66  1.00

ACGTcount: A:0.25, C:0.16, G:0.30, T:0.28


Consensus pattern (36 bp):   
ATCGCAATTGCGGGCTTAAGGGAGACTATTGCGGTC
Done.