Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01060.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2331
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34


Found at i:398 original size:16 final size:16

Alignment explanation


    Indices: 377--407  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

        367 AGCTTATGGG

                            
        377 TTTTTCCTTTCTTTTT
          1 TTTTTCCTTTCTTTTT

                  *        
        393 TTTTTCTTTTCTTTT
          1 TTTTTCCTTTCTTTT

        408 CTGAAATCTG


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   14  1.00

ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84


Consensus pattern (16 bp):   
TTTTTCCTTTCTTTTT
Done.