Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01875.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6079
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.35


Found at i:5900 original size:91 final size:91

Alignment explanation


    Indices: 5717--5958  Score: 240
    Period size: 91  Copynumber: 2.7  Consensus size: 91

       5707 TAATATACAT

                       *             *                                       
       5717 ATTAAACATTTTAAAAGTATAAGTATCACATTGAACATATTATAAAAATATAAGTACCAAATAAT
          1 ATTAAACATTTCAAAAGTATAAGTACCACATTGAACATATTATAAAAATATAAGTACCAAATAAT

               *                      
       5782 ACATAAATTAATAGTTCACATACCAC
         66 ACACAAATTAATAGTTCACATACCAC

                                               *    *  * *   *               
       5808 ATTAAACAATTTCAAAA-TATATA-TACCACATTGCACATTTTTTGAAAGTATAAGTACCAAATA
          1 ATTAAAC-ATTTCAAAAGTATA-AGTACCACATTGAACATATTATAAAAATATAAGTACCAAATA

                       *  *   * **  *   
       5871 ATACACAAATTGATTGTTTAGGTATCAC
         64 ATACACAAATTAATAGTTCACATACCAC

               **            *       *    *  *       *          *         
       5899 ATTGTACATTTC-AAAGAATAAGTATCACAATGGACAT-TTTTAAAAATATATGTACCAAAT
          1 ATTAAACATTTCAAAAGTATAAGTACCACATTGAACATATTATAAAAATATAAGTACCAAAT

       5959 GTGATATTAT


Statistics
Matches: 124,  Mismatches: 23, Indels: 10
        0.79            0.15        0.06

Matches are distributed among these distances:
  89   24  0.19
  90   20  0.16
  91   71  0.57
  92    9  0.07

ACGTcount: A:0.46, C:0.13, G:0.08, T:0.33


Consensus pattern (91 bp):   
ATTAAACATTTCAAAAGTATAAGTACCACATTGAACATATTATAAAAATATAAGTACCAAATAAT
ACACAAATTAATAGTTCACATACCAC
Done.