Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01102.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 866

Length: 1444
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35


Found at i:598 original size:55 final size:55

Alignment explanation


    Indices: 537--648  Score: 224
    Period size: 55  Copynumber: 2.0  Consensus size: 55

        527 TGCTAAATGC

                                                                   
        537 TTGTTTAATTAACTATGTCAGTGGTGCTTCTAGTTTTGAGATGCTTTCTTTTGTT
          1 TTGTTTAATTAACTATGTCAGTGGTGCTTCTAGTTTTGAGATGCTTTCTTTTGTT

                                                                   
        592 TTGTTTAATTAACTATGTCAGTGGTGCTTCTAGTTTTGAGATGCTTTCTTTTGTT
          1 TTGTTTAATTAACTATGTCAGTGGTGCTTCTAGTTTTGAGATGCTTTCTTTTGTT

              
        647 TT
          1 TT

        649 TGCCCCCTTG


Statistics
Matches: 57,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  55   57  1.00

ACGTcount: A:0.16, C:0.11, G:0.20, T:0.54


Consensus pattern (55 bp):   
TTGTTTAATTAACTATGTCAGTGGTGCTTCTAGTTTTGAGATGCTTTCTTTTGTT

Found at i:1047 original size:24 final size:24

Alignment explanation


    Indices: 1015--1063  Score: 98
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       1005 GCATTTAAAG

                                    
       1015 AGATACTATTCTTCTTCCCTCAAC
          1 AGATACTATTCTTCTTCCCTCAAC

                                    
       1039 AGATACTATTCTTCTTCCCTCAAC
          1 AGATACTATTCTTCTTCCCTCAAC

             
       1063 A
          1 A

       1064 ATTTGCTGTT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   25  1.00

ACGTcount: A:0.27, C:0.33, G:0.04, T:0.37


Consensus pattern (24 bp):   
AGATACTATTCTTCTTCCCTCAAC
Done.