Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01109.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3693
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.34


Found at i:1016 original size:133 final size:133

Alignment explanation


    Indices: 778--1044  Score: 534
    Period size: 133  Copynumber: 2.0  Consensus size: 133

        768 CCGTGGAAAC

                                                                             
        778 CCAAAGTTAGCTTCAATGAAACTAGACTGTAAATTCTGCTCTTCGATAAGCAACAAATGGGACCG
          1 CCAAAGTTAGCTTCAATGAAACTAGACTGTAAATTCTGCTCTTCGATAAGCAACAAATGGGACCG

                                                                             
        843 ATCTGCAGTATAACTAACTTTTAATTATTATTTTTATGTTTGAATTTGAAAGACGGCATTGATGC
         66 ATCTGCAGTATAACTAACTTTTAATTATTATTTTTATGTTTGAATTTGAAAGACGGCATTGATGC

               
        908 AAG
        131 AAG

                                                                             
        911 CCAAAGTTAGCTTCAATGAAACTAGACTGTAAATTCTGCTCTTCGATAAGCAACAAATGGGACCG
          1 CCAAAGTTAGCTTCAATGAAACTAGACTGTAAATTCTGCTCTTCGATAAGCAACAAATGGGACCG

                                                                             
        976 ATCTGCAGTATAACTAACTTTTAATTATTATTTTTATGTTTGAATTTGAAAGACGGCATTGATGC
         66 ATCTGCAGTATAACTAACTTTTAATTATTATTTTTATGTTTGAATTTGAAAGACGGCATTGATGC

               
       1041 AAG
        131 AAG

             
       1044 C
          1 C

       1045 GTGTAGATAC


Statistics
Matches: 134,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 133  134  1.00

ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33


Consensus pattern (133 bp):   
CCAAAGTTAGCTTCAATGAAACTAGACTGTAAATTCTGCTCTTCGATAAGCAACAAATGGGACCG
ATCTGCAGTATAACTAACTTTTAATTATTATTTTTATGTTTGAATTTGAAAGACGGCATTGATGC
AAG
Done.