Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01115.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2789
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29


Found at i:2218 original size:3 final size:3

Alignment explanation


    Indices: 2212--2273  Score: 106
    Period size: 3  Copynumber: 20.7  Consensus size: 3

       2202 CTACTATGAT

                                      *           *                        
       2212 GAC GAC GAC GAC GAC GAC GAA GAC GAC GAT GAC GAC GAC GAC GAC GAC
          1 GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC

                              
       2260 GAC GAC GAC GAC GA
          1 GAC GAC GAC GAC GA

       2274 TGATGATGAT


Statistics
Matches: 55,  Mismatches: 4, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   3   55  1.00

ACGTcount: A:0.35, C:0.29, G:0.34, T:0.02


Consensus pattern (3 bp):   
GAC

Found at i:2289 original size:3 final size:3

Alignment explanation


    Indices: 2283--2317  Score: 61
    Period size: 3  Copynumber: 11.7  Consensus size: 3

       2273 ATGATGATGA

                                              *           
       2283 TGG TGG TGG TGG TGG TGG TGG TGG TGT TGG TGG TG
          1 TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TG

       2318 ATGATAGCTA


Statistics
Matches: 30,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   3   30  1.00

ACGTcount: A:0.00, C:0.00, G:0.63, T:0.37


Consensus pattern (3 bp):   
TGG

Done.