Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01117.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1961
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32


Found at i:164 original size:6 final size:6

Alignment explanation


    Indices: 153--182  Score: 60
    Period size: 6  Copynumber: 5.0  Consensus size: 6

        143 CATTGCCTTG

                                              
        153 GGCTTC GGCTTC GGCTTC GGCTTC GGCTTC
          1 GGCTTC GGCTTC GGCTTC GGCTTC GGCTTC

        183 ACAGCATTAT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   24  1.00

ACGTcount: A:0.00, C:0.33, G:0.33, T:0.33


Consensus pattern (6 bp):   
GGCTTC

Done.