Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01144.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7242
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33


Found at i:1589 original size:25 final size:25

Alignment explanation


    Indices: 1560--1610  Score: 84
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       1550 CAAAGGAAAA

                   **                
       1560 TCCTAATCTAATTCCTAATTTAAAG
          1 TCCTAATAGAATTCCTAATTTAAAG

                                     
       1585 TCCTAATAGAATTCCTAATTTAAAG
          1 TCCTAATAGAATTCCTAATTTAAAG

             
       1610 T
          1 T

       1611 TTATAAGGAA


Statistics
Matches: 24,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  25   24  1.00

ACGTcount: A:0.37, C:0.18, G:0.06, T:0.39


Consensus pattern (25 bp):   
TCCTAATAGAATTCCTAATTTAAAG

Found at i:6253 original size:25 final size:25

Alignment explanation


    Indices: 6224--6274  Score: 84
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       6214 CAAAGGAAAA

                   **                
       6224 TCCTAATCTAATTCCTAATTTAAAG
          1 TCCTAATAGAATTCCTAATTTAAAG

                                     
       6249 TCCTAATAGAATTCCTAATTTAAAG
          1 TCCTAATAGAATTCCTAATTTAAAG

             
       6274 T
          1 T

       6275 TTATAAGGAA


Statistics
Matches: 24,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  25   24  1.00

ACGTcount: A:0.37, C:0.18, G:0.06, T:0.39


Consensus pattern (25 bp):   
TCCTAATAGAATTCCTAATTTAAAG
Done.