Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01151.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 967

Length: 1613
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37


Found at i:121 original size:72 final size:73

Alignment explanation


    Indices: 3--166  Score: 242
    Period size: 72  Copynumber: 2.3  Consensus size: 73

          1 AC

                                                     *             *  *      
          3 CCTTCTCCCTCTTTTTCATTCTCATGTATGAAGCATCTTCTTTTTTTC-ATTCTTTTTTCCATTT
          1 CCTTCTCCCTCTTTTTCATTCTCATGTATGAAGCATCTTCTGTTTTTCAATTCTTCTTCCCATTT

                    
         67 CCTTACAA
         66 CCTTACAA

                   *    *               *                                    
         75 CCTTCTCTCTCTCTTTCATTCTC-TCGTCTGAAGCATCTTCTGTTTTTCAATTCTTCTTCCCATT
          1 CCTTCTCCCTCTTTTTCATTCTCAT-GTATGAAGCATCTTCTGTTTTTCAATTCTTCTTCCCATT

                 *   
        139 TCCTTCCAA
         65 TCCTTACAA

                               
        148 CCTTCTCCCTCTTTTTCAT
          1 CCTTCTCCCTCTTTTTCAT

        167 GCTTCTATCC


Statistics
Matches: 81,  Mismatches: 9, Indels: 3
        0.87            0.10        0.03

Matches are distributed among these distances:
  71    1  0.01
  72   42  0.52
  73   38  0.47

ACGTcount: A:0.13, C:0.32, G:0.04, T:0.51


Consensus pattern (73 bp):   
CCTTCTCCCTCTTTTTCATTCTCATGTATGAAGCATCTTCTGTTTTTCAATTCTTCTTCCCATTT
CCTTACAA

Done.