Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01161.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3783
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.33


Found at i:649 original size:28 final size:28

Alignment explanation


    Indices: 605--662  Score: 107
    Period size: 28  Copynumber: 2.1  Consensus size: 28

        595 GCAGCGTCAA

                                        
        605 AGTTGATTTTAACTGTTAAACTAGTTGG
          1 AGTTGATTTTAACTGTTAAACTAGTTGG

                        *               
        633 AGTTGATTTTAAGTGTTAAACTAGTTGG
          1 AGTTGATTTTAACTGTTAAACTAGTTGG

              
        661 AG
          1 AG

        663 CTATCCATCT


Statistics
Matches: 29,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  28   29  1.00

ACGTcount: A:0.29, C:0.05, G:0.24, T:0.41


Consensus pattern (28 bp):   
AGTTGATTTTAACTGTTAAACTAGTTGG
Done.