Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01161.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 537

Length: 895
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35


Found at i:547 original size:28 final size:28

Alignment explanation


    Indices: 503--560  Score: 107
    Period size: 28  Copynumber: 2.1  Consensus size: 28

        493 GACACGTCAA

                                        
        503 AGTTGATTTTAACTGTTAAACTAGTTGG
          1 AGTTGATTTTAACTGTTAAACTAGTTGG

                        *               
        531 AGTTGATTTTAAGTGTTAAACTAGTTGG
          1 AGTTGATTTTAACTGTTAAACTAGTTGG

              
        559 AG
          1 AG

        561 CTATCCATCT


Statistics
Matches: 29,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  28   29  1.00

ACGTcount: A:0.29, C:0.05, G:0.24, T:0.41


Consensus pattern (28 bp):   
AGTTGATTTTAACTGTTAAACTAGTTGG
Done.