Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01165.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3413
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.32


Found at i:3145 original size:24 final size:24

Alignment explanation


    Indices: 3118--3176  Score: 100
    Period size: 24  Copynumber: 2.5  Consensus size: 24

       3108 TTATGGGATT

                        * *         
       3118 CAAACACCTCCGTCGTGGGTGATG
          1 CAAACACCTCCGCCATGGGTGATG

                                    
       3142 CAAACACCTCCGCCATGGGTGATG
          1 CAAACACCTCCGCCATGGGTGATG

                       
       3166 CAAACACCTCC
          1 CAAACACCTCC

       3177 ACATTTTTTT


Statistics
Matches: 33,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  24   33  1.00

ACGTcount: A:0.25, C:0.36, G:0.22, T:0.17


Consensus pattern (24 bp):   
CAAACACCTCCGCCATGGGTGATG
Done.