Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga08g01166.P1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8353
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Found at i:1900 original size:39 final size:39
Alignment explanation
Indices: 1838--2145 Score: 490
Period size: 39 Copynumber: 7.9 Consensus size: 39
1828 ATGCATGACA
* *
1838 CTGGAAATGTATCCGGTCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
* *
1877 CGGGCAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
*
1916 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
* *
1955 CTGGAAATGTATCCGGGCCAAAGTCCCACAGGCTTCATG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
*
1994 CTGGAAATGTATCCGGGCCAAAGTCCCGTAGGCTTCGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
* *
2033 CTGGAAATGTATCTGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
2072 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
* ** *
2111 CGGGAAATGTATCCGGGTTAATGTCCCGCAGGCTT
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTT
2146 TGTACAGGTA
Statistics
Matches: 247, Mismatches: 22, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 247 1.00
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
Found at i:7899 original size:39 final size:39
Alignment explanation
Indices: 7843--8150 Score: 501
Period size: 39 Copynumber: 7.9 Consensus size: 39
7833 TTCCGAGACA
7843 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * * *
7882 CGGGAAATGTATCCGGGCCAAAGTCCCGCAGGTTTCGAG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
7921 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
7960 CTGGAAATGTATCCGGGAC-AAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGG-CTAAAGTCCCGCAGGCTTCGTG
*
7999 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
8038 CTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
8077 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGTCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * *
8116 CGGGAAATGTATTCGGGTTAAAGTCCCGCAGGCTT
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTT
8151 TGTACTGGTA
Statistics
Matches: 249, Mismatches: 18, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
38 1 0.00
39 247 0.99
40 1 0.00
ACGTcount: A:0.22, C:0.26, G:0.31, T:0.22
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Done.