Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01186.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3197
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31


Found at i:1179 original size:17 final size:16

Alignment explanation


    Indices: 1145--1188  Score: 52
    Period size: 17  Copynumber: 2.6  Consensus size: 16

       1135 ATCAAAATTA

                      *     
       1145 ATCAAAAAAATTAGAT
          1 ATCAAAAAAAGTAGAT

                          *  
       1161 ATCAAGAAAAAGTATAT
          1 ATCAA-AAAAAGTAGAT

                       
       1178 ATCAAATAAAA
          1 ATCAAA-AAAA

       1189 AAAATACTTA


Statistics
Matches: 24,  Mismatches: 2, Indels: 3
        0.83            0.07        0.10

Matches are distributed among these distances:
  16    6  0.25
  17   18  0.75

ACGTcount: A:0.64, C:0.07, G:0.07, T:0.23


Consensus pattern (16 bp):   
ATCAAAAAAAGTAGAT
Done.