Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01204.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5249
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.35


Found at i:4726 original size:39 final size:34

Alignment explanation


    Indices: 4654--4720  Score: 125
    Period size: 34  Copynumber: 2.0  Consensus size: 34

       4644 CCATGTTCTG

                                              
       4654 CACCAATCAACTCAACAGTACATTATACAAATTT
          1 CACCAATCAACTCAACAGTACATTATACAAATTT

                *                            
       4688 CACCCATCAACTCAACAGTACATTATACAAATT
          1 CACCAATCAACTCAACAGTACATTATACAAATT

       4721 CAATTTTATT


Statistics
Matches: 32,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  34   32  1.00

ACGTcount: A:0.43, C:0.28, G:0.03, T:0.25


Consensus pattern (34 bp):   
CACCAATCAACTCAACAGTACATTATACAAATTT
Done.