Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01207.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2031
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.33


Found at i:97 original size:19 final size:19

Alignment explanation


    Indices: 75--112  Score: 58
    Period size: 19  Copynumber: 2.0  Consensus size: 19

         65 CCTCTTTGCG

                         *     
         75 TTCTTTTCCCTTTTCCTTT
          1 TTCTTTTCCCTTTCCCTTT

                     *         
         94 TTCTTTTCCGTTTCCCTTT
          1 TTCTTTTCCCTTTCCCTTT

        113 CTTTCTTTTA


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  19   17  1.00

ACGTcount: A:0.00, C:0.32, G:0.03, T:0.66


Consensus pattern (19 bp):   
TTCTTTTCCCTTTCCCTTT
Done.