Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01208.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 629

Length: 1049
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29


Found at i:707 original size:101 final size:101

Alignment explanation


    Indices: 532--735  Score: 399
    Period size: 101  Copynumber: 2.0  Consensus size: 101

        522 AGTGCTACTA

                          *                                                  
        532 CCCCACAAGCACCGGTAGGGATGGCGTAGTGTTGAAAGCAAGGCAGCTCAAAATATTTACCTTTA
          1 CCCCACAAGCACCGATAGGGATGGCGTAGTGTTGAAAGCAAGGCAGCTCAAAATATTTACCTTTA

                                                
        597 TGGCAATGTTATTGTGGTTAACAAGACTTGTCCAAG
         66 TGGCAATGTTATTGTGGTTAACAAGACTTGTCCAAG

                                                                             
        633 CCCCACAAGCACCGATAGGGATGGCGTAGTGTTGAAAGCAAGGCAGCTCAAAATATTTACCTTTA
          1 CCCCACAAGCACCGATAGGGATGGCGTAGTGTTGAAAGCAAGGCAGCTCAAAATATTTACCTTTA

                                                
        698 TGGCAATGTTATTGTGGTTAACAAGACTTGTCCAAG
         66 TGGCAATGTTATTGTGGTTAACAAGACTTGTCCAAG

              
        734 CC
          1 CC

        736 GGAATCGATG


Statistics
Matches: 102,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
 101  102  1.00

ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25


Consensus pattern (101 bp):   
CCCCACAAGCACCGATAGGGATGGCGTAGTGTTGAAAGCAAGGCAGCTCAAAATATTTACCTTTA
TGGCAATGTTATTGTGGTTAACAAGACTTGTCCAAG
Done.