Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01208.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2084
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36


Found at i:1742 original size:101 final size:101

Alignment explanation


    Indices: 1567--1770  Score: 399
    Period size: 101  Copynumber: 2.0  Consensus size: 101

       1557 AGTGCTACTA

                          *                                                  
       1567 CCCCACAAGCACCGGTAGGGATGGCGTAGTGTTGAAAGCAAGGCAGCTCAAAATATTTACCTTTA
          1 CCCCACAAGCACCGATAGGGATGGCGTAGTGTTGAAAGCAAGGCAGCTCAAAATATTTACCTTTA

                                                
       1632 TGGCAATGTTATTGTGGTTAACAAGACTTGTCCAAG
         66 TGGCAATGTTATTGTGGTTAACAAGACTTGTCCAAG

                                                                             
       1668 CCCCACAAGCACCGATAGGGATGGCGTAGTGTTGAAAGCAAGGCAGCTCAAAATATTTACCTTTA
          1 CCCCACAAGCACCGATAGGGATGGCGTAGTGTTGAAAGCAAGGCAGCTCAAAATATTTACCTTTA

                                                
       1733 TGGCAATGTTATTGTGGTTAACAAGACTTGTCCAAG
         66 TGGCAATGTTATTGTGGTTAACAAGACTTGTCCAAG

              
       1769 CC
          1 CC

       1771 GGAATCGATG


Statistics
Matches: 102,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
 101  102  1.00

ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25


Consensus pattern (101 bp):   
CCCCACAAGCACCGATAGGGATGGCGTAGTGTTGAAAGCAAGGCAGCTCAAAATATTTACCTTTA
TGGCAATGTTATTGTGGTTAACAAGACTTGTCCAAG
Done.