Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01208.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 645

Length: 1076
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.29


Found at i:683 original size:101 final size:101

Alignment explanation


    Indices: 560--762  Score: 397
    Period size: 101  Copynumber: 2.0  Consensus size: 101

        550 TTGGCATCAG

                         *                                                   
        560 CCCACAAGCACCGGTAGGGATGGCGTAGTGTTGAAAGCAAGGCAGCTCAAAATATTTACCTTTAT
          1 CCCACAAGCACCGATAGGGATGGCGTAGTGTTGAAAGCAAGGCAGCTCAAAATATTTACCTTTAT

                                                
        625 GGCAATGTTATTGTGGTTAACAAGACTTGTCCAAGC
         66 GGCAATGTTATTGTGGTTAACAAGACTTGTCCAAGC

                                                                             
        661 CCCACAAGCACCGATAGGGATGGCGTAGTGTTGAAAGCAAGGCAGCTCAAAATATTTACCTTTAT
          1 CCCACAAGCACCGATAGGGATGGCGTAGTGTTGAAAGCAAGGCAGCTCAAAATATTTACCTTTAT

                                                
        726 GGCAATGTTATTGTGGTTAACAAGACTTGTCCAAGC
         66 GGCAATGTTATTGTGGTTAACAAGACTTGTCCAAGC

             
        762 C
          1 C

        763 GGAATCGATG


Statistics
Matches: 101,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
 101  101  1.00

ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26


Consensus pattern (101 bp):   
CCCACAAGCACCGATAGGGATGGCGTAGTGTTGAAAGCAAGGCAGCTCAAAATATTTACCTTTAT
GGCAATGTTATTGTGGTTAACAAGACTTGTCCAAGC
Done.