Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01209.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1797
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31


Found at i:88 original size:3 final size:3

Alignment explanation


    Indices: 80--105  Score: 52
    Period size: 3  Copynumber: 8.7  Consensus size: 3

         70 AAGTTTCTCC

                                              
         80 TTG TTG TTG TTG TTG TTG TTG TTG TT
          1 TTG TTG TTG TTG TTG TTG TTG TTG TT

        106 TTTTTTTTTT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   23  1.00

ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69


Consensus pattern (3 bp):   
TTG

Found at i:110 original size:1 final size:1

Alignment explanation


    Indices: 104--129  Score: 52
    Period size: 1  Copynumber: 26.0  Consensus size: 1

         94 GTTGTTGTTG

                                      
        104 TTTTTTTTTTTTTTTTTTTTTTTTTT
          1 TTTTTTTTTTTTTTTTTTTTTTTTTT

        130 GCGTAATTCT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   25  1.00

ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00


Consensus pattern (1 bp):   
T

Done.