Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01247.F6

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3879
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33


Found at i:3808 original size:39 final size:39

Alignment explanation


    Indices: 3731--3809  Score: 113
    Period size: 39  Copynumber: 2.0  Consensus size: 39

       3721 ATTCACATAA

                                  *     *          
       3731 AATTTTAGTTGAAATCAAATTTTGAATTTGATCCGTGAT
          1 AATTTTAGTTGAAATCAAATTTCGAATTCGATCCGTGAT

                            *             *  *     
       3770 AATTTTAGTTGAAATCGAATTTCGAATTCGTTCTGTGAT
          1 AATTTTAGTTGAAATCAAATTTCGAATTCGATCCGTGAT

             
       3809 A
          1 A

       3810 CCCTCATCCA


Statistics
Matches: 35,  Mismatches: 5, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  39   35  1.00

ACGTcount: A:0.32, C:0.09, G:0.16, T:0.43


Consensus pattern (39 bp):   
AATTTTAGTTGAAATCAAATTTCGAATTCGATCCGTGAT
Done.