Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01891.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4312
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.30


Found at i:190 original size:12 final size:12

Alignment explanation


    Indices: 173--199  Score: 54
    Period size: 12  Copynumber: 2.2  Consensus size: 12

        163 AATAAGCAAG

                        
        173 ATTACAATATAT
          1 ATTACAATATAT

                        
        185 ATTACAATATAT
          1 ATTACAATATAT

               
        197 ATT
          1 ATT

        200 TCTAGATTTT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   15  1.00

ACGTcount: A:0.48, C:0.07, G:0.00, T:0.44


Consensus pattern (12 bp):   
ATTACAATATAT

Found at i:971 original size:33 final size:33

Alignment explanation


    Indices: 929--1004  Score: 134
    Period size: 33  Copynumber: 2.3  Consensus size: 33

        919 TGGATCAGAA

                                             
        929 GACGAAGACATTGGTAAAGGGACAAGATTCGAT
          1 GACGAAGACATTGGTAAAGGGACAAGATTCGAT

                                   *       * 
        962 GACGAAGACATTGGTAAAGGGACTAGATTCGGT
          1 GACGAAGACATTGGTAAAGGGACAAGATTCGAT

                      
        995 GACGAAGACA
          1 GACGAAGACA

       1005 GTAGTATAGG


Statistics
Matches: 41,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  33   41  1.00

ACGTcount: A:0.38, C:0.13, G:0.32, T:0.17


Consensus pattern (33 bp):   
GACGAAGACATTGGTAAAGGGACAAGATTCGAT
Done.