Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01278.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2174
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.27


Found at i:13 original size:2 final size:2

Alignment explanation


    Indices: 7--41  Score: 61
    Period size: 2  Copynumber: 17.5  Consensus size: 2

          1 AGCTTT

                            *                                   
          7 GA GA GA GA GA GT GA GA GA GA GA GA GA GA GA GA GA G
          1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G

         42 GGGGGGGGTT


Statistics
Matches: 31,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   2   31  1.00

ACGTcount: A:0.46, C:0.00, G:0.51, T:0.03


Consensus pattern (2 bp):   
GA

Done.