Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01280.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 892

Length: 1487
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28


Found at i:1038 original size:21 final size:21

Alignment explanation


    Indices: 1012--1051  Score: 62
    Period size: 21  Copynumber: 1.9  Consensus size: 21

       1002 TGTTAGAACC

                                 
       1012 CAGCAACAGGCTACCCCAAGT
          1 CAGCAACAGGCTACCCCAAGT

                  *   *        
       1033 CAGCAAGAGGGTACCCCAA
          1 CAGCAACAGGCTACCCCAA

       1052 CTCAACAAGG


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.35, C:0.35, G:0.23, T:0.07


Consensus pattern (21 bp):   
CAGCAACAGGCTACCCCAAGT
Done.