Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01296.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 814

Length: 1357
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.31


Found at i:870 original size:41 final size:41

Alignment explanation


    Indices: 809--891  Score: 139
    Period size: 41  Copynumber: 2.0  Consensus size: 41

        799 AAGTAATTTT

                           *      *                  
        809 ACAGATCCATTAACTGAAATCAGCCCCTAATATTCCATAGA
          1 ACAGATCCATTAACTAAAATCAACCCCTAATATTCCATAGA

                                      *              
        850 ACAGATCCATTAACTAAAATCAACCCTTAATATTCCATAGA
          1 ACAGATCCATTAACTAAAATCAACCCCTAATATTCCATAGA

             
        891 A
          1 A

        892 TAGACACCTT


Statistics
Matches: 39,  Mismatches: 3, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  41   39  1.00

ACGTcount: A:0.42, C:0.25, G:0.07, T:0.25


Consensus pattern (41 bp):   
ACAGATCCATTAACTAAAATCAACCCCTAATATTCCATAGA
Done.