Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01297.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 641

Length: 1069
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.26


Found at i:1059 original size:21 final size:20

Alignment explanation


    Indices: 1030--1068  Score: 51
    Period size: 21  Copynumber: 1.9  Consensus size: 20

       1020 GATAGAGATG

                *                
       1030 TATAGCATTACAATATGCTTC
          1 TATACCATTACAAT-TGCTTC

                     *        
       1051 TATACCATTTCAATTGCT
          1 TATACCATTACAATTGCT

       1069 C


Statistics
Matches: 16,  Mismatches: 2, Indels: 1
        0.84            0.11        0.05

Matches are distributed among these distances:
  20    4  0.25
  21   12  0.75

ACGTcount: A:0.31, C:0.21, G:0.08, T:0.41


Consensus pattern (20 bp):   
TATACCATTACAATTGCTTC
Done.