Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01301.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 259

Length: 432
ACGTcount: A:0.31, C:0.14, G:0.12, T:0.44


Found at i:305 original size:13 final size:13

Alignment explanation


    Indices: 287--311  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

        277 TGCAACCAGA

                         
        287 AACATGTTTCATG
          1 AACATGTTTCATG

                        
        300 AACATGTTTCAT
          1 AACATGTTTCAT

        312 TCAAGCTAAT


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.32, C:0.16, G:0.12, T:0.40


Consensus pattern (13 bp):   
AACATGTTTCATG
Done.