Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01318.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1721
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30


Found at i:56 original size:6 final size:7

Alignment explanation


    Indices: 39--66  Score: 56
    Period size: 7  Copynumber: 4.0  Consensus size: 7

         29 GATTGGGAGA

                   
         39 AAAAAAG
          1 AAAAAAG

                   
         46 AAAAAAG
          1 AAAAAAG

                   
         53 AAAAAAG
          1 AAAAAAG

                   
         60 AAAAAAG
          1 AAAAAAG

         67 TGTGTGAGCT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   21  1.00

ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00


Consensus pattern (7 bp):   
AAAAAAG

Done.