Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01328.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5767
ACGTcount: A:0.28, C:0.21, G:0.15, T:0.36


Found at i:5372 original size:21 final size:20

Alignment explanation


    Indices: 5348--5386  Score: 51
    Period size: 20  Copynumber: 1.9  Consensus size: 20

       5338 CAACTGATTG

                                 
       5348 TAATATCATTACTATAATATT
          1 TAATATCA-TACTATAATATT

                *    *        
       5369 TAATCTCATGCTATAATA
          1 TAATATCATACTATAATA

       5387 ACTAATTTTA


Statistics
Matches: 16,  Mismatches: 2, Indels: 1
        0.84            0.11        0.05

Matches are distributed among these distances:
  20    9  0.56
  21    7  0.44

ACGTcount: A:0.41, C:0.13, G:0.03, T:0.44


Consensus pattern (20 bp):   
TAATATCATACTATAATATT
Done.