Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01329.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 651

Length: 1086
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37


Found at i:188 original size:18 final size:18

Alignment explanation


    Indices: 165--201  Score: 56
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        155 GTAACTTTTC

                              
        165 TTTCTTCTTCTTTTTATT
          1 TTTCTTCTTCTTTTTATT

                  *  *        
        183 TTTCTTTTTTTTTTTATT
          1 TTTCTTCTTCTTTTTATT

             
        201 T
          1 T

        202 CTCTGTTTTT


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.05, C:0.11, G:0.00, T:0.84


Consensus pattern (18 bp):   
TTTCTTCTTCTTTTTATT

Found at i:194 original size:16 final size:17

Alignment explanation


    Indices: 160--213  Score: 51
    Period size: 16  Copynumber: 3.2  Consensus size: 17

        150 CAATGGTAAC

                *             
        160 TTTTCTTTCTTCTTCTTT
          1 TTTTATTTCTTCTT-TTT

                              
        178 TTATT-TTTCTT-TTTTT
          1 TT-TTATTTCTTCTTTTT

                              
        194 TTTTATTTC-TCTGTTTT
          1 TTTTATTTCTTCT-TTTT

               
        211 TTT
          1 TTT

        214 CTTGAGTACA


Statistics
Matches: 32,  Mismatches: 0, Indels: 9
        0.78            0.00        0.22

Matches are distributed among these distances:
  15    3  0.09
  16   10  0.31
  17    9  0.28
  18    8  0.25
  19    2  0.06

ACGTcount: A:0.04, C:0.13, G:0.02, T:0.81


Consensus pattern (17 bp):   
TTTTATTTCTTCTTTTT

Found at i:210 original size:18 final size:18

Alignment explanation


    Indices: 175--213  Score: 60
    Period size: 18  Copynumber: 2.2  Consensus size: 18

        165 TTTCTTCTTC

                     *   *    
        175 TTTTTATTTTTCTTTTTT
          1 TTTTTATTTCTCTGTTTT

                              
        193 TTTTTATTTCTCTGTTTT
          1 TTTTTATTTCTCTGTTTT

               
        211 TTT
          1 TTT

        214 CTTGAGTACA


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  18   19  1.00

ACGTcount: A:0.05, C:0.08, G:0.03, T:0.85


Consensus pattern (18 bp):   
TTTTTATTTCTCTGTTTT
Done.