Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01332.C4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4024
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.38


Found at i:3577 original size:23 final size:23

Alignment explanation


    Indices: 3551--3659  Score: 116
    Period size: 23  Copynumber: 4.7  Consensus size: 23

       3541 AAATGTTGTT

                                    
       3551 AATTG-AGATGTTAAAGTGCTGCA
          1 AATTGAAG-TGTTAAAGTGCTGCA

                              *   * 
       3574 AATTGAAGTGTTTAAA-TACTGTA
          1 AATTGAAGTG-TTAAAGTGCTGCA

                                   
       3597 AATTGAAGTGTTAAAGTGCTGCA
          1 AATTGAAGTGTTAAAGTGCTGCA

                         *        * 
       3620 AATTGAAGTGTTTGAA-TGCTGTA
          1 AATTGAAGTG-TTAAAGTGCTGCA

                 *      *    
       3643 AATTGGAGTGTTTAAGT
          1 AATTGAAGTGTTAAAGT

       3660 ACTTATTTTG


Statistics
Matches: 73,  Mismatches: 8, Indels: 10
        0.80            0.09        0.11

Matches are distributed among these distances:
  22    9  0.12
  23   53  0.73
  24   11  0.15

ACGTcount: A:0.34, C:0.06, G:0.25, T:0.36


Consensus pattern (23 bp):   
AATTGAAGTGTTAAAGTGCTGCA

Found at i:3590 original size:46 final size:46

Alignment explanation


    Indices: 3528--3659  Score: 176
    Period size: 46  Copynumber: 2.9  Consensus size: 46

       3518 CAACTCATGT

                  *    *      *   *                        
       3528 AATTGAGGTGTATAAATGTTGTTAATTG-AGATGTTAAAGTGCTGCA
          1 AATTGAAGTGTTTAAATGCTGTAAATTGAAG-TGTTAAAGTGCTGCA

                             *                            
       3574 AATTGAAGTGTTTAAATACTGTAAATTGAAGTGTTAAAGTGCTGCA
          1 AATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCA

                         *              *      *    
       3620 AATTGAAGTGTTTGAATGCTGTAAATTGGAGTGTTTAAGT
          1 AATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTTAAAGT

       3660 ACTTATTTTG


Statistics
Matches: 76,  Mismatches: 9, Indels: 2
        0.87            0.10        0.02

Matches are distributed among these distances:
  46   74  0.97
  47    2  0.03

ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37


Consensus pattern (46 bp):   
AATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCA
Done.